As someone who provides tech support in my day job, and has done so for 35 years, I guarantee the first thing Waves Support will suggest is updating the plugins. Step #1 is always to bring the software up-to-date and see if the problem is still reproducible. It's unlikely they'd be able to reproduce Thomas' exact setup anyway, and even if they could, they're not likely to pursue it if it doesn't apply to the current revision.
Unfortunately, the OP's situation is highly unusual. Not unique, but unusual.
When I did O/S support back in the day, I had a nuclear power plant that was so far out of rev there were only a couple guys in the office who were knowledgeable about their software. Newer, younger guys (like me) would tell them to upgrade. But the plant was under strict NRC regulations that made it extremely difficult and time-consuming to upgrade any software, requiring them to stay on a known stable version for years and years. It was, after all, a nuclear power plant! If it ain't broke,
don't touch it.
For them, the answer was the same as it may have to be for Thomas: they froze those machines in time and never updated ANYTHING. At least until a piece of hardware broke down that was no longer manufactured. One solution for the OP would be to set aside a computer that's dedicated to this one project, and NEVER update it.