I'm just guessing here, but...I think that part of the whole Windows update thing is about protection from various, new mutant strains of viruses, ransomware, etc. If you have software with copy protection, that copy protection might reach deep into the Windows operating system, so Windows thinks it's something malevolent.
If this is the case, it could take a while before new types of copy protection for Windows programs come into play that are compatible with the kind of frequent updates Microsoft is doing. Think of how many different types of copy protection have existed since software came along...perhaps an additional evolution is needed.