If you have Share Drivers enabled in SONAR, changing focus away from SONAR will close audio ports, silencing any noise. That's normal, but the noise is not.
And you don't want to be disabling the multi-processing engine; that's what let's SONAR use all cores on your CPU to balance the load.
It sounds like you have a grounding issue or interference from mouse, video or some peripheral. You should take it up with Jim Roseberry.