I'm running latest Win 10 and Kontakt 5 updates without any issues in Sonar (other than specific bugs with Sonar I've mentioned elsewhere).
I would clean out the VST folders, both 32-bit and 64-bit, of any Kontakt DLLs, including previous versions if they exist. Then manually copy or reinstall. It might be best to search your whole system for Kontakt DLLs but I would definitely check *all* the VST folder locations configured within Sonar regardless of what is supposed to be in them.
Its possible a damaged DLL has not been removed before reinstalling and is sitting there laughing in the face of uninstall protocols.
If you've already done a thorough clean of your system for pre-existing versions, I'd probably have a look at the Sonar settings. What bit depth and frequency do you run at? Try reducing those settings and see how Kontakt behaves. NI products sometimes get a bit over-excited at higher settings and don't stop gracefully (I'm looking at you Reaktor). If no difference then return them to previous state.
Personally, I'd also have a nosey in the registry but I don't recommend that unless your very sure of your ability to recover from any mis-clicks in there.