What to keep in mind is that a basic Digital drum kit is mostly plain old velocity and on/off. Not much more than whacking a keyboard as far as the variation in sound that comes out. The pads are like hitting rubber coated disks. Your not going to get much more tonal changes than what velocity offers with a midi drum synth. For a lot of drum parts this is just fine. You can always go in and edit and tweak things to taste, just like with using a keyboard or a Octapad type input device.
But the Roland top of the line kits respond almost like a real drum kit. They are amazing beasts. So if your having a real drummer come in and do the parts they will be way more comfortable and play better, more naturally dynamic parts.
It will sound much more like real drums especially if you do use the brain which has been optimized to pick up the little details. I recommend recording the brain as well as the midi. Also have the drummer monitoring with the brain. Their timing will be better. Even though it might only be a few ms, latency throws most good drummers off.
You can sort out the midi mapping later. You might find there's nothing wrong with some of the Roland sounds too.
I do believe there are separate audio outputs you can use.
What you can do with just a hi hat set up on a good kit is a world of difference.
Put a real drummer on basic digital kit and they will not be happy.