I noticed odd things happening to the control surface configuration as well, in regards to the contour shuttle pro v2.
After I add my Contour shuttle, adding other surfaces gets weird. I can add them, but they do not show up in the list. They do appear in the control surfaces widget, but hang on "Connecting...". When I delete the contour shuttle entry, all the entries after it show up in the config editor, but the entries donot function. Removing and re-adding them gets them connecting again.
If I add the Contour shuttle last, everything works fine. So before I add a new surface, I have to remember to delete the Shuttle's entry, add my new surface, then add back the shuttle.
I'm using the latest shuttle software.
So, if you happen to use a shuttle, you might want to give that work around a try.