You mean the Scarlett didn't line up???
My 6i6 was bang on.
I used the audio loopback method. You take a midi snare or ? and bounce it to audio.
Then you patch output to input ( turn off input echo ) and record it to a new audio track.
Zoom way in and compare the offset. Try it in ASIO and WDM mode if your interface supports both. My 6i6 does not support WDM but my Tascam does. Notice in the picture how Session drummers audio lines up perfectly with the midi track,, The ASIO tracks are early,, I used high and low settings , made no difference,,then WDM mode is late.. this is important. You might not even know it's happening.
Top track Midi
Next Session drummer
next ASIO normal setting
next ASIO Highest setting
last track WDM mode