It has been years since I have stopped using my audio interface for both Sonar and as the Windows Default Audio Device, so I may well be completely off base.
I am wondering if you have things set to where Windows and Sonar ARE both using the audio interface, I wonder if you have Windows changing the sample rate to 44.1 k (which is its default), and perhaps have Sonar set to use 48 k.
If the above, or some variation, is NOT how you are running, my son had a weird similar thing happening, and it had something to do with audio looping or something like that. There was some kind of way he had flags/markers on some imported audio loop and just for that one project, it was making the tempo slow down and the pitch lower. I wish I could remember more about the exact cause, because changing some aspect of that imported audio loop DID fix the issue.
If nobody jumps in with a better handle on what I am getting at with the above, then I will circle back in an hour or so and try digging up the thread for you.
Sorry my brain is apparently leaking these days - the meds do NOT help with that. :)
Bob Bone