It sounds like you may not have your TH3 track configured correctly.
After applying the WDM/KS settings I mentioned earlier, open the Preferences>Audio>Devices tab and enable the USB Input Device. Hit apply and close preferences.
Open a project and insert an audio track. Select the USB Input as the track's input source, and enable the input echo button for that track. At this point you should be able to hear your guitar and see audio levels coming in on Sonar's track meters.
To add TH3, just load it into the track's FX region as you would any other VST effect.