Given that the audio files were simply copied over, we can assume that they are bit-identical to the originals. That means the pops aren't actually embedded in the files themselves, but rather are real-time artifacts that occur during playback. I wouldn't expect that to be dependent on the SONAR version; my guess is you'd hear the same pops if you installed 8.5 on the new computer and played those projects through it.
More likely, the issue is with the new computer. First, make sure the ASIO buffers are the same size as they were on the old computer, so you're comparing apples to apples. If they're the same, look at other factors that might be causing interruptions to the data stream, such as having a wi-fi adapter enabled. Check your DPC latency with
LatencyMon.