Looks like you have some bigger issues to solve first but if you want to take full advantage of your S49 keyboard you should be inserting the Komplete Kontrol shell and then loading Absynth in the the shell. This will ensure you can browse patches and use the encoders on the keyboard as intended.
I have a thread with tips on using the S series keyboards
http://forum.cakewalk.com/FindPost/3368341 I would not worry too much about it immediatly but it may be worth bookmarking for later.
But once you have solved your basic issues (there is some great advice in this thread) you are libal to run into the issue of setting up trandport controls, so here is the relevent part of my thread.
Transport Controls in Sonar.
NI documentation indicates the Keyboard should be set up as a MCU surface however I could not get that to work. I found a solution in this thread http://forum.cakewalk.com/FindPost/3102650 Setting it up as a VS-100 surface seems to work. I have not tried to set anything up beyond transport controls.