I see what you are talking about now. I was not aware of it, because I have never had to use it. Here is a picture of it:

As you can see, there are no sample rate or bit depth settings to adjust. My other interface, which is on a Win7 system has the same thing. I don't know if focusrite is different.
Most people only adjust their settings in Sonar and their interface's console. You should probably leave it at 48K if it works and modify the settings in the focusrite console.
Actually, I do see where you can adjust the sample rate and bit depth in the IN properties. Mine are set to 44.1K 16 bit, but Sonar has 44.1K and 24 bit and I have no issues. Again I *never* have to go in there to do anything in that menu.