I had forgotten that while an ASIO Buffer Size of 64 usually was OK for one of my audio interfaces, 32 was pushing it - and after updating to RC1, I began having weird audio engine dropouts AND one or both midi controllers being lost to Sonar - even though they were still connected and Windows and Sonar were both indicating they were working fine.
As soon as I bumped back up to 128, all of the weirdness went away, and I left a project looping for the past 3 hours and had no issues, whereas with the smaller ASIO Buffer Size settings of either 32 or 64, I would get an audio engine dropout or one/both midi controllers would be disconnected to Sonar when they weren't OR the audio engine would dropout.
So - just a thought to maybe bump up the ASIO Buffer Size a tad, to see if it helps.
Bob Bone