Contact support. It really sounds like this issue relates to a 64-bit program and OS trying to deal with 32-bit plug-ins. Support can probably make sure you have correct install paths and such so that when running 64 bit, SONAR finds the 64-bit plugs and when running 32-bit, SONAR finds the 32-bit plugs.
I highly, highly recommend running 64-bit programs and plug-ins in a 64-bit environment, use 64-bit plug-ins as much as possible, and if you have to use 32-bit plug-ins, do so by bridging within a 64-bit environment.