OK, another hour of testing and the culprit seems to be how and when FX are implemented and maybe a dash of the Steinberg driver. In my last hour of testing, I loaded the song that I had originally noticed the sync problem with, but this time I held down the 'shift' key before I clicked on the song title, which brought up a screen that asked me which FX I wanted to enable. I chose 'none', loaded it up and then applied Melodyne Studio 4 to the 2 vocal tracks, did the transfer thing, and they actually worked in perfect sync - shocking! After this unexpected success, I added Izotope 2 and, oops, the scrolling stopped dead, so I closed without saving and opened it again, but this time I did allow only the Melodyne FX to load. This time everything worked, Melodyne was in perfect sync and Izotope (which I added later) worked fine as well. However, I hit the "FX" button and immediately all scrolling stopped again within the Melodyne screen. Obviously there's definitely a bug or 2 in there and I hope they fix it soon.
Oh yeah, I also did a little 10 second song where I sang from 1 to ten at the measure/marker points, one track in english and 1 track in german (high school german finally put to use). I panned one hard left and one hard right and "everything" was working great until I tried to add a drum loop and noticed the preview was silent for all the loops - why, who knows it used to work before this latest build, good grief.....and I started this little song with just a totally blank template that imported no known FX. Time for a break... Hopefully they get it all worked and it would be real nice if one could assign different colors to different tracks to more easily differentiate between blobs. Right now, all the blobs are orange which gets very confusing.