This is a long shot but...
In the Synth Rack try toggling your Solo and Mute buttons on the entries that won't unfreeze then try to unfreeze them again.
I say this because a while back I had the reverse problem. Essentially the Freeze buttons became unavailable on certain synths (but not others). By total fluke someone else here (I forget who... sorry mystery helper) had the same problem and suggested the Solo/Mute toggle. Totally worked... so maybe this is the same problem in reverse.
It's some obscure intermittent bug (or absolutely horrible design flaw).
Sorry if that's not of help but it's worth a shot.
Also restarting Sonar or rebooting the system might shake something loose.
Cheers.
PS: If you can't figure it out and you created a Save As of the project before freezing (but after creating the MIDI file(s)) you could just open that project, toss a single event at the very start of the clip(s) (so just put a note at 00:00:00), bounce to clips (if there are multiple clip segments in the tracks) then drag the clip to the Browser. Open your current project, create a new track(s) and drag the MIDI clip(s) into it.
You could also save the original tracks as Track Templates to retain any properties (like FX/synth settings and whatnot) and then load it/them into the current project.