So you in fact want them to cooperate... What happens if you use in/out from the second MCU with "Mackie XT" plug-in? There is one place where XT different from MCU from software perspective, its "ID" (MCU has 0x14, XT has 0x15). I am not sure either that is important, if things are not working as expected, I can make a mod where XT also has 0x14.
About crashes... I guess that is coming from within Sonar. MCU is not working throw ACT Dyn. mapping with VST plug-ins, as all other surfaces do. And there are some problems in parameter names (MCU tries to display them). It is just a guess, unconfirmed and not reported so far (while at least you and I have seen that effect). So no fix at the moment. I do not have MCU and I am not using an emulator (TouchDAW) for plug-in control. If you can collect some statistic when that happens, for example with which plug-ins that happens more often, may be I or Cakewalk can find the bug (in plug-in/in sonar/in both).