From Craig Anderton:
RECORDING THE METRONOME TO A TRACK
Note: If your project already contains a Metronome bus, skip to step 7.
1. Choose Insert > Stereo Bus to create a new bus for the audio metronome.
2. Rename the new bus to Metronome.
3. Choose Edit > Preferences > Project – Metronome.
4. Select the Recording check box and clear the Playback check box (you’ll hear the recorded metronome instead during playback).
5. Select “Use Audio Metronome.”
6. Click the Output drop-down menu and select the bus named Metronome, then click OK to close the Preferences dialog box.
7. Click the Metronome bus’s Output control and select New Aux Track on the pop-up menu.
8. Arm the Aux Track for recording.
9. Begin recording.