I usually have all the hardware installed first but it should not matter.
WRT SONAR, there are a few plug-ins from older versions which might be nice to have. Most plug-ins can be installed individually by using the advanced install option of the release containing the plug-in. V-Vocal is the exception, it require a minimal install of SONAR. Here is a post containing the info regarding plug-ins by version
http://forum.cakewalk.com/FindPost/3217211. While not absolutely necessary, if you plan on restoring V-Vocal, run that minimal install prior to loading a newer version of SONAR.
With the exception of Addictive Drums and any upgrade to Melodyne (if you purchased one), the Command Center can handle everything else when it comes to Platinum, including DPro, Rapture and RPro, which is bundled with Platinum. You will need to download and install the XLN Audio installer to re-install Addictive Drums and you will need to handle any Melodyne upgrades, if any, directly with Celemony.
Because the Command Center requires rewriting the installers, there are some products which do not appear in it. You may need to check your Cakewalk account to download and install those items, such as older versions of SONAR (if you want the missing plug-ins) and zeta+2.
Also if you are running the regular Rapture and not Rapture Pro, do not forget the expansion packs available from the Rapture support page.