I've upsampled a project recorded at 48 to 96 for a client who wanted higher sample rates....'what the client wants, the client gets!'
My advice. You say that the majority of your project is MIDI based? Try - delete / unfreeze / export all wav files that you don't need until your project is essentially MIDI parts only. Save that project as a copy at a higher sample rate then start from scratch wit the wav files (or reimport them at a higher rate).
If you have problems saving as copy with MIDI files in the project, you'll have to export all MIDI files too.
You can always try saving the project with existing plugins, VSTs etc as a template, so you don't have to go through all this again.
I've got some templates setup with all my go-to instruments etc...just to save time.
My old copy of Cool Edit Pro has batch convert which works a dream for mass converting old wav files [who needs new software, right? ;) ], after converting, you can reintroduce them into the project.