colodean
So I have no idea why, but I think I may have figured it out.  Under the midi devices, I have 3 for my keyboard.
FA-06/08, FA-06/08 DAW CTRL and FA-06/08 CTRL.  If I set my tracks input to the FA-06/08 CTRL everything seems to work.  I still get a few odd note durations but its a hand full out of 350 ish measures instead of a hand full of correct notes.  I have no idea why there is a difference or why there are 3 different inputs for the keyboard.  I appreciate all the thoughts here and hopefully this solves future problems.  (I did note this down and tape it to my monitor for future reference)