lawp
so you can apply effects to the whole mix before it hits the "master" out (speakers)
The Master out is not the speakers.. You could have (and I do have) more than one set of speakers.
On a hardware mixer a standard scenario would be two pairs of speakers (for A/B comparison), a set of headphones and of course a record output.
With Sonar and a sound card your options are limited by the number of outputs on your sound card, but most have at least 4 (2 stereo pairs).
The Master is the point in the chain where all the signals are summed together to produce the final output. This is what should be sent to disk when you "export". You send the default output of the Master to your soundcards default speaker output. If you have extra speakers, add a "post send" to the Master and route it to the next pair of outputs on your sound card. Use the Soundcard outputs section of the console (very far right side of the console) to mute/unmute the speakers you want to hear.
For monitoring of reference tracks:
create a new bus, call it "Reference". Add your favourite limiter in the FX box to protect your speakers from "overs". Send the output to your main speaker output (same as the Master).
Place your reference material in a standard track and route it to the "reference" bus, not the Master.
Quick group the Master and Reference busses with ONE of them muted. You can now switch between your mix and your reference and back at the press of a single mute button.