I finally got a minute to sit down and actually work on things and inadvertently retriggered this which is not a bug, but was caused by modifying the map in AD2. I had taken a midi file from eons ago and began routing the outputs all over and routed it to AD2 (with an internal map for Geist loaded). The snares (Key 38) suddenly were hi-hat hits (but that is how it is mapped internal to AD2). I am doing a lot of track template work this afternoon (X3) and this one is obvious (and not a bug). I am hoping that it is something similar for what you are doing.
Do you happen to have the cwp still that is causing you grief? If so, if you wouldn't mind shooting me a PM and attaching that (just the cwp itself), I would like to close the loop on this one to get the OP closed for you. I just want to track the MIDI routing internally on that for you. I also do not want to leave that bug report active if this is the root cause of everything.