I had a similar problem to what Jerry has listed. It happened once when I accidently opened a project when another project was minimized, but yesterday it happened with 1 project opened. A simple midi drum track using AD2.
The first thing I did was to close and reopen the project and it had no effect.
The second step was to shut down Sonar and empty the picture cache followed by a restart. No effect
I then did a shut down and hard boot. That fixed it and there have been no further problems.
When I saw this problem the audio stream was fine but the screen was only getting graphic updates once per second. I timed it and every second the now time would move with a screen refresh. While it was acting this way the mouse was also lagging. When I would click on the transport to stop it there was a delay in doing so, just like the refresh of the screen. IT almost seemed like a windows problem.