After giving this issue some careful thought, I believe the distortion issue is occuring before you even record into your audio interface and SONAR, because the meters in SONAR are showing no clipping. In other words, the signal you are recording is already distorted. I highly suggest you look for a solution in the signal chain before the signal enters your audio interface.
I know you don't agree with them all, but logical suspected culprits are listed below:
(guitar, guitar strings, fuzz pedal or whatever you're using to create the intentional distortion you are applying to the guitar sound, playing the note/s too hard, cables from the guitar to the amp, and the amp itself, even though you said you had it serviced)
I'd bet $100 it's one of the things I listed. My number one suspect is: fuzz pedal or whatever you're using to create the intentional distortion you are applying to the guitar sound, combined with playing the note/s too hard in light of the intentional distortion you are already applying to the guitar sound.
Goodluck in resolving the issue.