Freeze all tracks you aren't actively working on.
Does it still happen?
If yes, then it's something common (busses, masters) or perhaps even outside of Sonar.
If not, then:
A.
Unfreeze half your tracks.
Does it still happen?
If yes, re-freeze half of the tracks you just unfroze.
If not, re-freeze and unfreeze the other half.
Goto A.
Keep going, narrowing down by halves, until you are left with the track that's causing it.
Also, activate the waveform display on the master track(s) and
see if there's anything visible.