I've been playing around with this, and have reached the following conclusions:
- Other than the case noted earlier in this thread where the send to a bus with a PDC-inducing plug on it is toggled off and on without restarting the transport, I can't reproduce a problem with phasing between direct output and parallel send buses except in the case of a send bus used only by Addictive Drums (AD1 does it as well as AD2). That's not to say it can't happen in other scenarios, but I haven't seen it personally.
- In the case of AD, I've found that if any other audio track is also sending to the parallel bus along with AD, then there's no problem. This can be a track with a recorded or bounced drum part, another soft synth output or even an audio track that just has input echo enabled with no signal on it.
- The phase error seems always to be exactly 64 samples, so in lieu of adding some other audio track sending to the parallel bus, the phase error can be compensated by adding 64-sample delay to the parallel bus using Channel Tools or some other sample-delay plugin.