bapu
I think Beepster noticed a similar problem when using a 70's amp/preamp as the input?
Indeed I did and it the wave looked very similar to what Geoff posted (except it looked more compressed in the top half of the clip).
I have since done quite a bit more recording using the same output and the result has been the same. I have also been paying close attention to the wave being drawn in the parent track as it is recorded and it looks perfectly balanced. It only goes wonky after I stop recording and the wave redraws in a lane. There is absolutely no noticeable degradation of sound quality so tlw may be right in his guess that perhaps Sonar is doing something strange when redrawing.
However I have also done a little more research about "balanced" signals and it seems this could be from some kind of issue where one pin is getting slightly more juice (or a different type of juice) than the other for some reason. This would kind of jibe with a battery dying on an active pickup I think (I ain't no electrical talkin' dude).
Either way, as was said to me multiple times when I reported the issue if it sounds alright there is no problem and off kilter waves like this are common and normal... just not usually for signals like a guitar.
The only potential problem I've found mentioned anywhere about this type of out od whack wave is that when running it through something like a compressor the effect may be hit harder than normal by the negative phase of the wave (or positive I guess if the wave was off kilter in the other direction). This makes it so the compressor will be working harder on one side harder than the other and thus reducing the desired effect (because it is not hitting the other side evenly.
I think in that case if it a major problem a possible fix/workaround could be to use a two stage compression set up where the first compressor takes care of the uneveness of phase cycles then the second would be what you would normally get your compressor to do.
Not ideal but it might work IF there is a problem.
Sorry if that is dumb or doesn't make sense. I'm still kind of trying to understand it all myself.
Cheers.