I had some Sonar graphic weirdness last year until I changed out my video card per a suggestion here. I didn't know it was the root of the problems since it appeared at the time that sonar was the only program with graphics issues. However, it was failing and eventually completely failed after a short while being installed in another pc.
Other than that shot in the dark, is this a problem with several projects? Have you experienced these issues in a project started and built from new blank template project? As others as mentioned here, this sounds "offset" or "automation" related. As IFM mentioned above, does this behavior happened when the "read" button is disengaged?