@200bpm, I'm a RME UCX user. I now use the fiber cable that came with the interface to loopback all ADAT channels for live monitoring. It's kinda useful. I know you know about the loopback button on a pair of outputs, but when you use that button the inputs cannot be routed again to the hardware outputs. If you use the fiber cable to loopback the ADAT channels, you can loop back as many times as you want (stacking the eqs and compressors). Just at tip.
Using my RME UCX, the only way to conjoin two non contiguous tracks into a stereo track in Sonar is to loopback (either using ADAT fiber or the Totalmix Loopback button) or record as mono tracks and bounce to stereo.
@200BPm, you can save snapshots and workspaces in Totalmix to bring them back up quickly. Remember the Total Reset under options - reset mix.
Lastly, if you aren't using RME DigiCheck, you should totally check it out!! Things I use regularly in Digi Check are the Spectral Analyzer, the Vector Scope, the EBU Meter, and Global Record. Global record is really worth checking out for making live recordings where you do all your mixing in Total Mix. No need to mess with Sonar until the show is captured. It writes all the audio data to a single file and it writes it very efficiently. Saves me a ton of time and headache when I'm not going to be monitoring anything out of Sonar.
Also, thanks for suggesting the organization of the two tracks into a stereo pair. It'd never considered doing this before your post and I can appreciate it as a good way to keep the two together and organized.
I mainly use a track template for recording the guitar which has the direct input, left and right stereo track for my Roland GR20 outputs and a midi track. I love that you can group the midi with the audio. Set this under preferences > Project > Record > Multi-Track Grouping - (I use group only in folders).
Using Multi-Track Grouping allows you to edit across many tracks (not just 2) splitting, cropping, nudging etc. Or using Fast Comp tools.