First off, make sure Jammer isn't exporting your midi files as
Type 0you want a midi Type 1 file for doing single midi track editing.
Take your individual midi tracks and Drag them in to sonar and drop them in a synth/midi track.
Then right click on the midi track you want to edit and choose Views/Piano Roll View.
You also must make sure the midi file is in the appropriate track (the SIT/the synth track).
That piece you just wrote... you can always copy/save that by dragging it in to the browser
(to a folder you created in Windows explorer). Then simply drag that piece back in where it belongs once you have all your nuts in a jar.