Check the System Common section of the MIDI Implementation Chart in your user manual to determine if Song Position is transmitted. I found the manual for the PA600 on the internet, but not the QT. The PA600 does not transmit or receive Song Position, which means that you can't sync to the middle of a song. That is a limitation of your KORG hardware, not SONAR.
IMHO, your best option is to use Record Punch in/Punch out in SONAR as Chuck suggested.
Set the start and end of the Punch section to the location you want to replace. Start recording from the start of the song with the KORG synced to SONAR. SONAR will only replace the section of the song that you defined in the Punch in/Punch out range.
EDIT: Removed help section documentation link, since I just realized the OP is using SONAR 8.5 and my link was for the current SONAR version.
Hope this helps,
-- Ron