I don't know if this applies to your situation, but I will share my thoughts just in case it does.
I generally use Battery 3 for my midi drums, because I have used it for years, and it sounds great most of the time.
Anyways - I too route each kit piece to its own audio outputs, however not all of the kit pieces in a particular kit are mono - several may well be stereo. Most of the time, the snare and kick seem to be stereo - where left may be top and right might be bottom, for the snare, and so on.
I am in the middle of a bunch of stuff, and apologize, as I cannot go load up a project and tell you how to figure out which kit pieces are stereo/mono - plus I am a bit brain dead from doing an 1100 mile drive to help a friend move.
Anyways - in addition to what the others posted above, perhaps you can check to see if you are missing some of the sound of kit pieces that are meant to be routed as stereo, versus mono.
Hope that helps,
Bob Bone