I am using a Asus Xonar DS PCI audio card in ASIO mode with Sonar Platinum 2017.1 I am recording at 48Khz 24bit depth and I have a total round trip latency is at 6.0 milliseconds. (input 2ms, output 4ms). Playback and recording timing master is set to the Asus. Playback and Record IO buffer sizes are set to 512KB
With all of the above I have zero issues recording audio from an external source using this card.
I also have the motherboard's on-board realtek audio enabled for non Sonar related audio - I still have zero issues in Sonar.
Can you tell us a bit more about your system. Ram, CPU and speed, OS, Windows update status, etc?