bokchoyboy
Is there any way to just have the clip indicators reset without the music starting up again?
If you stop the transport, the clipping indicators are reset -- or at least they are reset when you start the next time.
If it is not an issue you wish to manage with compression, then you should lower all levels. Select all the tracks, and then hold down the ctrl key while adjusting one of the track faders. That will adjust everything in proportion, stopping the distortion and leaving your mix in place.
It is really important to get the levels into a non-clipping range before you do much else because many of the other effects behave differently at high input levels. You need to get everything down into a reasonable working range that does not clip before doing much else with the mix.