If you're still interested TranceCanada, I got rid of my automation track and still made it save. I had a Group of 2 knobs that weren't saving. I finally got it to save by Remote Control mapping both knobs to the same physical knob on my MIDI controller. It finally saved. No more re-Grouping when opening the Project.
The funny thing is, I had deleted the knobs, and then the 2 parameters in FM8 were still operating together with the mouse! I had to fix this by reinserting the same knobs and right clicking for Clear Group on both virtual knobs to let my synth parameters operate independently again. Just quirks to Sonar.