Jerry, are you referring to the fact that the Starting Track value in the Paste Special dialog doesn't override the focused track as it should? Because I don't know any paste target issues other than that, and it's easily avoided by ensuring the focused track is correct
I realize this is somewhat inconvenient when you want to paste to a track other than the current one from the Staff or Event List views, but it doesn't sound like that's the case for the OP.
I know there have been a lot of complaints about SONAR's pasting logic over the years, but I think the vast majority of cases have ultimately turned out to be due to user misunderstanding of the independence of clip selection and track focus.
It's always been solid for me with the exception of some issues related to paste not being fully lane-aware, and that's now been addressed as well.
EDIT: It occurs to me that there' one outstanding bug that's somewhat relvant, which is that track focus switching in the PRV doesn't work as expected
when there's a locked PRV in the project. But that bug usually means the the material pastes to the same track from which it was copied, which wouldn't explain 'disappearance' of the pasted material.