I cut the number of tracks in my project to two:
1. An audio track for guitar (I'll either use ProChannel with a mouse, or Maschine effects)
2. A track for Maschine VST
And just a hidden (for now) send track, and the Master track.
The Tranzport handles this scenario just beautifully. Maschine has enough power for any possible Midi Scenario, and I can use the effects in the audio track, controlled by Maschine .....
Very simple and easy to use (so far)
(Gotta admit; I had never really looked at Sonar since before X1, when I gave up on control surfaces... so I'm RTFM'ing Sonar Platinum.. a lot of new stuff since them... :)