This is a good idea.
Inside your case you have 1, 2 or 3 HDDs with an install of Windows and whatever other programs and data you work with on a regular basis.
Also inside the case you have another 3 HDDs with Windows and Sonar on one, your project data on another, and your samples on the third.
All it takes, is for you to unplug the power connector from the splitter that supplies the two configurations, and you have two bootable Windows configurations on different physical Drives.
The only time it takes to change over, is for you to power down the computer, swap power cables, then reboot.
I ran this system for a couple of years when using Windows XP, as I had a lot of programs, data and extraneous rubbish that really interfered with my install of Sonar 8. It worked a treat, and took about 2 minutes to swap installs. I tried a couple of other configurations, including dual boot, and this gave me the least problems by far. You don't have to muck about with configuration settings or partitioning of HDDs, it just works (to quote another fruit company).
You need to make sure you have enough SATA ports for your HDDs, but this is usually not an issue with motherboards these days. Do your regular install with Windows, regular programs, etc. on your first drives; then power down, change connectors, do your install with Windows and Sonar on your second series of HDDs and you're done. Usually you won't need anything other than Windows and your Sonar stuff installed on your second install, unless there is a program that you particularly need while Sonar is running.
The cost involved is only a few extra HDDs. Keep in mind that your C: drive for the Sonar install only needs to be small, as there will be only Windows, Sonar, Sonar updates, and any programs that you need for music production on this drive. The other advantage of this system is that should your everyday Windows install go belly up, you lose none of your music.
I suggest any musician building their own computer to look at this option as I can vouch for its simplicity and ease of use.