Hi,
I'm not sure if this is something you want to look at ...
Desktop, Documents, Downloads, Music, Pictures and Videos are ... sort of like "System Folders" ... and they have a tendency to force everything in there regardless.
What I do, is take everything away from those folders. I have, on a separate computer a folder for "Files Copy" and in there I have a copy of everything I do. On the main computer, it's still "Files", and that is where everything goes from each program, though things like Sonar are a pain in the arse with stuff from here to the moon and back, as are a couple of other music programs.
It also makes it easier to back up everything ... you only need to back up that folder since you can reload all the programs easy enough, and leaves less locations and spots to get corrupted in the computer all around.
It's a headache, for example, as I like to place my downloads in a particular place and while I can find a way to dictate the "downloads" folder to be the same as my "Wow Addons" folder and "Music Addons" Folder, and it will be fine for a few days, and then when you shut off the computer and it restarts the next day, upon entering into the house network, it changes things and the Downloads folder is no longer associated with the two folders listed. I just move all my downloads now to where I want them, and case is closed ...
There are certain things that you can't get around in Windows very well, and it is all a part of the program that Windows folks think you are stupid and would not know a download folder from toilet paper for your butt. It's beyond ridiculous, but as Windows has gotten better, one of the things it also did is hide things better, too! And this was one of them. Makes one ask why, and I can not find an answer other than ... we're stupid ... and it's always EUS issues!