If you are going to be patching physically for the best quality it is best if you can arrange the
digital output from your masterbuss say to be routed to the input of a stereo track. I do it using a digital mixer. It is one of the great features of using one. It easily allows any output to be routed back to an input and all digital connection.
You may need to stop input monitoring from your track that you are using in order to prevent a feedback loop but if you observe these things that can be avoided.
Using the analog Outputs back to your analog Inputs I think is a secondary option. If you cannot make this connection internally with your interface, using a digital switcher might be an option for physical connection. It will be a simple touch of a button to make the connection then when you want to. You could use your SPDIF connections to do this.
Just reading about it on the website also mentions the full capabaility of that unit may not be realised until you are running Cubase with it. Cubase may have the internal routing options you need. I don't think that is fair in a way. I think audio interface software should be tied to the computer rather than a program. eg EMU Patchmix is amazing for routing anything to anything and it operates right at the base computer level before you open up any DAW software.