That's what happens to me. Someone in one of those threads claim it's an unacknowledged bug, so maybe it doesn't happen to everyone. But mono track, a couple clips, bounce to clip with a -3 or -6dB center pan law and with the track pan centered, and it'll lower them by the center pan law value.
I also have the issue that I cannot delete any clips from a track until I've done any comping and bounced down. If I do, it randomly moves the muted sections to other tracks than the ones they were on. This is a completely consistent issue that always happens to me. Doesn't matter if I have any plugs in the project or not, as far as I've noticed so I don't think it's damage done by rogue plugs necessarily.
And the other thing that makes the think not is that if I press undo, it puts them all back again correctly. You'd think if it was some random memory overwrite and the info was already hosed, that the undo would have saved bad info for later restoral. But it always puts everything back correctly.
Clip mutes on the little mute buttons to the left of the track also get similarly scrambled if I delete a clip.