Done.
Not sure if you are familiar with the use of compressors. Jeff Evans
posted an excellent "How to" a while back that you may find useful as you move forward with things. Due to the variations of that track, working with segments that are similar is the best way to attack it.
AA's "Auto Heal" tool is something that is useful for rogue transients, and I have found most useful using the sonogram/spectral view. If you span a transient, so that the tool can see "good info" on either side (using the select tool to create a box), it has the best chances of performing well.