Me too. With AD2. With projects pre-Jamaica.
Will suddenly just skip a beat, in either Playback or Record, and it's random. Or the midi track will just start a second out of sync with audio tracks and remain that way. Tracking has to be broken up into 30sec or less sessions. Been chasing the problem for the last week. Should of just had a look on the Forum!!.
Also, I'm having tempo issues, or it's just slowing down, for a second or two, then goes back to the right tempo. It's not a tempo change, just something dragging the system down. Also, initial playback/record, the start speed may vary. My PC is not online and runs nothing but Sonar. If I save, close and exit, reboot, come back in, it will work OK again for maybe 20 takes, and then it all starts again. This all started with Jamaica.
I will roll back for the time being, and read back through this thread and other related threads to see what I can try.
cheers Dave.