Combination jacks are not really the problem...
When you use a combination jack you tie tip/pin2 to "+", ring/pin3 to "-", and sleeve/pin1 to common. You could, in theory tie the ring to common as well, but not all of the jack assemblies allow you to split out the TRS from the XLR.
Anyway, if you insert a TS plug in you tie the ring and sleeve together anyway, which immediately defeats any benefit from a differential (balanced) input.
Anyway, the general consensus amongst folks that would be identified as authorities on the topic of electronic noise reduction is that single-ended inputs are inherently bad when applied to professional and/or commercial applications. This does not apply to single-ended sources (outputs) - these can be made to work with differential inputs.
But here is where it gets tricky...
Not everyone understands how a balanced input works - and there are some heroically BAD implementations of balanced inputs out there. Further, the only way to truly balance a source is a transformer. Cross-coupled outputs are probably about as close as your are going to get to an electronically balanced output, and they have all sorts of problems - not the least of which is if you accidentally tie one side to ground you can burn up the output stage.
Tascam, when it was known as Teac, was the big proponent of single-ended interconnections for studios. BUT, if you read the manual for the Model 10 console or 80-8 tape deck you'll discover that they knew EXACTLY what the trade-offs were, and what users needed to do to take advantage of the benefits. Benefits? Yes, the biggest benefit of a single-ended interconnection is that it is easier (and less expensive) to design well. The single-ended connections on the old Teac gear took everything into account, including landing the shields on the chassis, not the circuit board.
It remains a demonstrable fact that a (well designed) balanced source feeding a (well designed) balanced input using a twisted pair with a braided or reussen shield is a measurably better technique than any other combination. The difference between electronically balanced inputs and transformer balanced inputs has become minimal, but a top quality transformer will perform slightly better.
The next best solution is a single-ended source feeding a balanced input, again assuming both are well designed, and the cable is a twisted pair, with braided or Reussen shield. Modifying the source to be impedance balanced (which is redundant<G>) provides a measurable benefit in a noisy environment.
Anything else is a compromise.
That said, it might be a compromise you can live with. I have set up studios using only single-ended inputs and outputs, and I've used coaxial cable, and with a little attention to detail I've been able to get the noise floor to a reasonable level.
It all depends on what you are trying to accomplish!!!
BUT, if the option to use balanced (differential) inputs arises, you really do want to take advantage of it!