What happens if you load the project in Sonar's Safe Mode, and skip the loading of all plugins?
This would let you know if perhaps one or more of the plugins is not playing nicely in this project, and would give you a starting point for figuring which one(s).
If things work OK with no plugins, try loading in Safe Mode again, loading only the 1st plugin, repeating the load in Safe Mode and an additional plugin, and so on, until you figure out which one is the last loaded when problems begin showing up.
Then, load again, up to that 'bad' one, skip it, and load the one past it, etc... to see if there are any others.
Just a thought - all predicated on the project working when all plugins are first skipped. If problems show up when you DID skip all plugins, then there may well be some sort of corruption, but let's start with the hope it is a plugin and go from there.
Bob Bone