Try setting the Motif to MIDI channel 2 and adjust your track's channel accordingly. If the extraneous notes stop, then somehow another track is getting routed to the Motif at the same time.
If they are truly random, then you may have an issue with a bad cable or USB port (assuming you're connected to the synth via USB). If it's not really random, and there is a particular spot during playback that you hear a consistent bogus note, check the Event List to see if there is a corresponding event there. Make sure there aren't any unwanted sysex dumps or patch change events in the MIDI track.
Another question: did you create this MIDI track yourself or did you download it from somewhere? If the latter, there can be all kinds of wonky stuff in the MIDI data.