Thanks Sidroe. No. The notes are not clashing as such. It's just the sound of the bass guitar, which is not midi, causing a misfit of sounds with the bass notes from the piano, which I played in through True Piano, so it is midi. I've already played around with all the notes to try and change things around a bit. With some success.
It's a problem of the sounds of the two 'combining'. Just like acoustic guitars, which I usually finger pick, and the bass. I find, probably because of the way I play guitar, that I have to remove a lot of around the low's and low mid's from guitars to stop the interferrence with my bass parts, but in this case, I simply cannot find an eq solution. I remove enough bass from the piano parts, and my beautiful full sounding piano is gone. Same with the bass, if I pull enough from it to work with the piano, there's not enough left.
Just can't find a happy medium between the pair. I was hoping someone who does a lot of work with piano, and bass, may have a process they find useful. Failing that, I was thinking of turning the bass into midi and going down that route, but I really like my bass sound. An old Ibanez Roadstar from the early 80's. It's worked well with everything so far, except this one section, of one song. First time I've gone for a very roomy full grand piano sound.