When I say go into another plugin, I mean open another one's synth page up.
So basically I have two automation lanes setup for Alchemy, and they are working fine, I I can clearly hear the automation working. Then I open up a different plugins (audio or synth actually) and alchemy's automation stops working. If I re-open alchemey's synth properties, the automation starts working again.
Note that the regular midi note data works the whole time.