Like I said, the menu bars is the same menu bar that all software uses, Once customized it is static and anchors the software. The same with preferences. You wouldn't want that to change all the time when you say, load older projects, you want it to stay the same.
Not sure why you want the TTS-1 to become audio, it uses very little resources so you normally just leave it as MIDI until export. I sure it can be bounced but might need more than one destination track if your using multi instruments.
You sound like you might benefit from picking up Scott's Power book...it will answer your questions in an easy to understand way. You can also search the user manual.